Find the right fluorochromes for your MACSQuant® Instrument

We have put together a comprehensive list of fluorochromes compatible with our MACSQuant Instruments.
Multi-color flow cytometry and cell sorting applications require the use of a wide range of fluorochrome-conjugated antibodies and dyes.

MACSQuant X, MACSQuant Analyzer 10, and MACSQuant Tyto® compatible dyes

LaserFilterChannelMiltenyi Biotec dyesOther dyes
405 nm (violet)450/50 nmV1VioBlue®, DAPI, Hoechst 33342, Viobility 405/452 Fixable DyeAlexa Fluor® 405, BD™ Horizon™ V450, BV421™, Calcein Violet 450 AM, Indo-1, Cascade Blue®, DAPI, Vybrant® DyeCycle™ Violet, eBFP, CFP, eFluor® 450, Super Bright 436, Pacific Blue™, Zombie Violet™, CF 405M, DyLight® 405
405 nm (violet)525/50 nmV2VioGreen™, Viobility 405/520 Fixable DyeAlexa Fluor 430, AmCyan, BD Horizon V500, BV510, Cascade Yellow™, Krome Orange™, Pacific Orange™, Qdot® 525, Zombie Aqua™, CF™ 405L
488 nm (blue)525/50 nmB1FITC, Vio® 515, VioBright™ 515, VioBright FITC, Viobility 488/520 Fixable DyeAlexa Fluor 488, Calcein AM, DyLight 488, CFSE, GFP, SYTOX® Green, Vybrant DyeCycle Green, YFP, Zombie Green™, BD Horizon Brilliant Blue 515 , Acridine Orange
488 nm (blue)585/40 nmB2PECy™ 3, Vybrant DyeCycle Orange, dsRed
488 nm (blue)655-730 nmB3PerCP, PerCP-Vio 700, PE-Vio 615, Propidium iodide, 7-AADPE-Cy 5, PE-Cy 5.5, PE-Alexa 700, PerCP-Cy 5.5, PerCP-eFluor 710
488 nm (blue)750 nm LPB4PE-Vio 770PE-Alexa Fluor 750, PE-Cy 7 , PE/Fire 780
635 nm (red)655-730 nmR1APC, Vio 667, VioBright 667Alexa Fluor 647, Cy 5, DRAQ5®, eFluor 660, Alexa Fluor 700
635 nm (red)750 nm LPR2APC-Vio 770APC-Alexa Fluor 750, APC-Cy 7, APC-eFluor 780, APC-H7, Zombie NIR™, APC Fire 750

MACSQuant VYB compatible dyes

LaserFilterChannelMiltenyi Biotec dyesOther dyes
405 nm (violet)450/50 nmV1VioBlue, DAPI, Hoechst 33342, Viobility 405/452 Fixable DyeAlexa Fluor 405, BD Horizon V450, BV421, Calcein Violet 450 AM, Indo-1, Cascade Blue, DAPI, Vybrant DyeCycle Violet, eBFP, CFP, eFluor 450, Super Bright 436, Pacific Blue, Zombie Violet, CF 405M, DyLight 405
405 nm (violet)525/50 nmV2VioGreen, Viobility 405/520 Fixable DyeAlexa Fluor 430, AmCyan, BD Horizon V500, BV510, Cascade Yellow, Krome Orange, Pacific Orange, Qdot 525, Zombie Aqua, CF 405L
488 nm (blue)525/50 nmB1FITC, Vio 515, VioBright 515, VioBright FITC, Viobility 488/520 Fixable DyeAlexa Fluor 488, Calcein AM, DyLight 488, CFSE, GFP, SYTOX Green, Vybrant DyeCycle Green, YFP, Zombie Green, BD Horizon Brilliant Blue 515 , Acridine Orange
488 nm (blue)614/50 nmB2Propidium iodideLss-mKate
561 nm (yellow)586/15 nmY1PECy 3, Vybrant DyeCycle Orange, dsRed
561 nm (yellow)615/20 nmY2PE-Vio 615mCherry, Texas Red, ECD, PE-Texas Red®, PE-CF594, PE/Dazzle™ 594, PE-eFluor® 610
561 nm (yellow)655-730 nmY3APC, Vio 667, VioBright 667Alexa Fluor® 647, Cy™5, DRAQ5®, eFluor® 660 mKate, PE-Cy™5.5, PE-Alexa 700, PE-Cy™5
561 nm (yellow)750 nm LPY4PE-Vio 770, APC-Vio 770PE-Alexa Fluor® 750, PE-Cy™7 , PE/Fire 780, APC-Alexa Fluor®750, APC-Cy™7, APC-eFluor® 780, APC-H7, Zombie NIR™, APC Fire 750

MACSQuant Analyzer 16 compatible dyes

LaserFilterChannelMiltenyi Biotec dyesOther dyes
405 nm (violet)450/50 nmV1VioBlue, DAPI, Hoechst 33342, Viobility 405/452 Fixable DyeAlexa Fluor 405, BD Horizon V450, BV421, Calcein Violet 450 AM, Indo-1, Cascade Blue, DAPI, Vybrant DyeCycle Violet, eBFP, CFP, eFluor 450, Super Bright 436, Pacific Blue, Zombie Violet, CF 405M, DyLight 405
405 nm (violet)525/50 nmV2VioGreen, Viobility 405/520 Fixable DyeAlexa Fluor 430, AmCyan, BD Horizon V500, BV510, Cascade Yellow, Krome Orange, Pacific Orange, Qdot 525, Zombie Aqua, CF 405L
405 nm (violet)579/34 nmV3 BV 570™, Qdot 565®, eFluor 565NC
405 nm (violet)615/20 nmV4 BV 605™, Qdot 605®, Super Bright 600, eFluor 605NC
405 nm (violet)667/30 nmV5 BV 650™, Qdot 655®, Super Bright 645, eFluor 650NC
488 nm (blue)525/50 nmB1FITC, Vio 515, VioBright 515, VioBright FITC, Viobility 488/520 Fixable DyeAlexa Fluor® 488, Calcein AM, DyLight 488, CFSE, GFP, SYTOX Green, Vybrant DyeCycle Green, YFP, Zombie Green, BD Horizon Brilliant Blue 515 , Acridine Orange
488 nm (blue)579/34 nmB2PECy 3, Vybrant DyeCycle Orange, dsRed
488 nm (blue)615/20 nmB3PE-Vio 615ECD, PE-Texas Red, PE-CF594, PE/Dazzle 594, PE-eFluor 610
488 nm (blue)667/30 nmB4PerCP, Propidium iodide, 7-AADPE-Cy 5
488 nm (blue)725/40 nmB5PerCP-Vio 700PerCP-Cy 5.5, PerCP-eFluor 710, PE-Cy 5.5, PE-Alexa 700
488 nm (blue)785/62 nmB6PE-Vio 770PE-Alexa Fluor 750, PE-Cy 7 , PE/Fire 780
640 nm (red)667/30 nmR1APC, Vio 667, VioBright 667Alexa Fluor 647, Cy 5, DRAQ5®, eFluor 660
640 nm (red)725/40 nmR2 Alexa Fluor 700
640 nm (red)785/62 nmR3APC-Vio 770APC-Alexa Fluor 750, APC-Cy 7, APC-eFluor 780, APC-H7, Zombie NIR, APC Fire 750

Can’t find what you are looking for?

We are happy to help out! Contact us at mqsupport@miltenyibiotec.com with further questions.

Can’t find what you are looking for?

We are happy to help out! Contact us at mqsupport@miltenyibiotec.com with further questions.